Because *contrary to popular male belief* women do not select a man by the size of his penis alone.
A micropenis is well able to impregnate a woman.
But even more: evolution isn’t that precise. Genetics are convoluted and complicated. As a made up example imagine gene A makes you immune to malaria, gene B makes your eyesight fantastic, but having A and B together makes you have no penis at all. Those genes would still be somewhat competetive, because people who only have 1 of them have an advantage and pass the genes on, and women can savely carry AB without issues.
I.E. there is no single-purpose-micropenis-gene.
Well, they would have disappeared if they weren’t functional. But after quite a while, things like this don’t have a fixed amount of time to happen.
Basically, if your friend down there works, there’s no need for humanity to change that. You are still capable to breed.
Obviously, if girls chose who to have babies with based on the weenie size, there could be a problem. But that’s not the case.
This is because a micropenis is not a simple genetic trait like blue eyes or a big nose.
Instead a micropenis will often occur because of a failure of the gonads to produce enough sex hormone for the penis to fully develop, and that in turn would be due to a problem with the pituitary gland or the hypothalamus.
So it isn’t like people with a micropenis are breeding true, instead it is simply that some people have genetics which make them somewhat more likely to have pituitary or hypothalamus problems that result in a micropenis. Those problems are very rare to occur, less than 1% of the population, and so they aren’t impactful enough to be completely eliminated through natural selection. Someone could have genetics that make them more likely to have a micropenis and yet it is overwhelmingly likely they still have normal genitalia despite that. All the equipment would work fine and until relatively recently everyone would be completely unaware there was increased risk!
A lot of things in biology are like this. For example some people have genetics which make them significantly more likely to have heart attacks than the population at large. Yet that trait isn’t completely removed from the population via natural selection because while they have significantly higher risk the actual prevalence of the issue is still very low. Even if they have three times the chance of the average person to have a heart attack, three times a slim chance is still very unlikely.
If based on natural selection, the other Redditors have answered it.
However if you are asking from a survival POV, my rationale is we (humans) tinker too much.
We have medications and procedures that allows us to prolong/sustain life, promote passing on of genetic diseases and defects.
It’s a slippery slope to start going down so will leave it at that.
I am however GLAD for the tinkering as it has prolong my life but flip side is my kids have a 50/50 chance of having it which will not be known until exposure happens.
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