There is actually a section on this in the International Plumbing Code. I’ve not done a system like this, but it involves storage tanks. Self flushing timers for the storage tank, screens, and even a different color of water line for the water. Instituting a system would be incredibly expensive, and like most things, won’t be done en masse until there is a good financial reason to do so. Right now clean water is just too cheep for large scale adoption
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