An atom actually has no “look”. Visible light has a wavelength of around 500nm, while a hydrogen atom is only around 0,1nm. That means that the light we see is way too “large” to show details of an atom, the light wave basically just passes through it.
So yes, all the figures are just theoretical illustrations from stuff we deducted from particle accelerator and classical experiments (e.g. that the atom is mostly empty and the core very small etc.)
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