Zip files don’t have a tree structure, just a list of entries. Each entry has a filename, which may or may not include subdirectories – for example if you have a folder inside the zip named “A” which contains two files “b.exe” and “c.txt”, then you’ll simply have two entries named “Ab.exe” and “Ac.txt”. The order of the entries within the zip file is not important – you can have one file from directory A, followed by a file from directory B, then another file from A etc.
Most zip programs would just extract the entries sequentially, creating the necessary folders and files as needed.
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