Involuntary actions in your body (things you can’t control, such as breathing, heart rate, blood pressure, etc.) are essentially controlled by receptors and enzymes, which act as gateways and messengers. A lot of common diseases involve systems we can’t directly control (diabetes, high blood pressure), so we use drugs to control how active/inactive the system is depending on what we need.
The best example for an agonist drug helping a disease is asthma. Asthma happens when the airways are swollen all the time, and close up more often, making it hard to breathe. Inhalers are filled with a drug that targets receptors and stimulates them (beta-2 agonists, specifically), which causes the airways to open up again. An antagonist would encourage the airways to close more, which as you can tell, would be pretty bad.
TL;DR – Some diseases need the receptors to be activated instead of deactivated. Agonists activate and antagonists deactivate. So we need agonists to stop some diseases and antagonists for others.
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