It’s more that it’s easier for bacteria to collect in one place and become ‘dense’ enough in a particular location to become a problem in stagnant water.
Just for the sake of this argument let’s pretend that you’ve got a collection of water on either side of you, one that’s just a sitting puddle, and one that’s a gently flowing stream. And at the same time you toss in a clump of bacteria into each one, and that each clump will reproduce and make a million new bacteria every minute, regardless of which water collection it’s in.
On the stagnant puddle side, as each minute goes by, there’s a million more bacteria, and they just keep “piling up” until the puddle can’t support anymore.
But on the flowing side, many of those bacteria are being swept away, and there’s a constant supply of clean water coming in and diluting what’s left.
A flowing water source isn’t really infinite, but it’s a lot more water than a completely static amount of water, so it’s going to be a lot harder to saturate with bacteria.
So basically, bacteria need nutrients to survive and reproduce. Stagnant water provides a perfect breeding ground for bacteria because it doesn’t have any movement to disperse the nutrients and waste products. On the other hand, running water constantly flushes out the bacteria and their waste, making it harder for them to thrive.
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