It’s not weight, it’s pressure. Think of water as really dense air. When the pressure inside the submarine is significantly less than the pressure outside, it compresses. You can replicate this at home by sucking the air out of a plastic bottle. Same principal. One thing submarines do to combat this, is slowly increase the internal air pressure so there is less of a differential. This has to be done slowly, to prevent it causing problems for the humans inside. Likewise when they come up to the surface, they need to undergo a decompression process. Just like when scuba-diving.
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