Even with species alive today we sometime discover that what we thought was 1 species was in fact 2 or that what we thought was 2 species is in fact 1 species
And that is with thing alive today, because nature is a very stubborn thing that refuse to neatly to fit into or human definition
So now you can imagine how complicated it is to do with millenias old bone shaped rock
TL:DR, it’s very difficult and we get it wrong a lot and constantly have to correct our old assumptions when new evidence are found
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