They don’t always get more productive later in an illness, but what you may have been experiencing is post-viral acute rhinosinusitis. In this scenario, a viral upper respiratory tract infection (a cold) sets up a more prolonged inflammatory process in your sinuses, leading to them discharging for a more prolonged period after the initial illness has cleared up. The mucus doesn’t really exist just to expel bad germs, but it’s the consequence of the inflammation caused by the illness.
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