Well first, stomach acid can kill many germs but not all of them. Second, in some cases of food-borne illness, it’s not the germs themselves that make you sick but toxins created by the germs, and stomach acid doesn’t do anything to those toxins. This is why can’t eat spoiled food even if it’s cooked. Yes, cooking may kill the germs, but it still leaves the toxins that make you sick.
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